Virus Details


VHFID1503

Host Factor Information

Gene Name RB1
HF Protein Name Retinoblastoma-associated protein
HF Function Delays the viral protein production
Uniprot ID P06400
Protein Sequence View Fasta Sequence
NCBI Gene ID 5925
Host Factor (HF) Name in Paper pRb
Gene synonyms N.A.
Ensemble Gene ID ENSG00000139687
Ensemble Transcript ENST00000267163
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000082, GO:0000122, GO:0000785, GO:0001047, GO:0001102, GO:0001558, GO:0001894, GO:0003677, GO:0003700, GO:0003713, GO:0005634, GO:0005654, GO:0005819, GO:0006338, GO:0006351, GO:0006355, GO:0006469, GO:0007050, GO:0007093, GO:0007265, GO:0007346, GO:0008134, GO:0010629, GO:0016032, GO:0016514, GO:0016605, GO:0019900, GO:0030521, GO:0031134, GO:0031175, GO:0031625, GO:0034088, GO:0034349, GO:0035189, GO:0035914, GO:0042551, GO:0042802, GO:0043353, GO:0043433, GO:0043550, GO:0045445, GO:0045651, GO:0045842, GO:0045879, GO:0045892, GO:0045893, GO:0045944, GO:0048565, GO:0048667, GO:0050680, GO:0050681, GO:0051146, GO:0051219, GO:0051301, GO:0051402, GO:0061676, GO:0071459, GO:0071466, GO:0071922, GO:0071930, GO:0090230, GO:0097284, GO:0097718, GO:2000134, GO:2000679,
MINT ID P06400
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 109800
PANTHER ID PTHR13742;PTHR13742:SF17
PDB ID(s) 1AD6, 1GH6, 1GUX, 1H25, 1N4M, 1O9K, 1PJM, 2AZE, 2QDJ, 2R7G, 3N5U, 3POM, 4CRI, 4ELJ, 4ELL,
pfam ID PF11934, PF01858, PF01857, PF08934,
Drug Bank ID DB00030, DB00071,
ChEMBL ID CHEMBL5288
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Human SARS coronavirus
Virus Short Name SARS-CoV
Order Nidovirales
Virus Family Coronaviridae
Virus Subfamily Coronavirinae
Genus Betacoronavirus
Species Betacoronavirus 1
Host Bats, human
Cell Tropism Epithelial cells of respiratory or enteric tracts, neurological tissues are also frequently infected
Associated Disease Mainly respiratory diseases
Mode of Transmission Respiratory or fecal-oral in humans
VIPR DB link https://www.viprbrc.org/brc/vipr_allSpecies_search.spg?method=SubmitForm&decorator=corona
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/positive-sense-rna-viruses-2011/w/posrna_viruses/222/coronaviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Coronaviridae

Publication Information

Paper Title The coronavirus endoribonuclease Nsp15 interacts with retinoblastoma tumor suppressor protein
Author's Name Kanchan Bhardwaj,corresponding authora Pinghua Liu,b Julian L. Leibowitz,b and C. Cheng Kaoa
Journal Name JOURNAL OF VIROLOGY
Pubmed ID 22301153
Abstract Coronaviruses encode an endoribonuclease, Nsp15, which has a poorly defined role in infection. Sequence analysis revealed a retinoblastoma protein-binding motif (LXCXE/D) in the majority of the Nsp15 of the severe acute respiratory syndrome coronavirus(SARS-CoV) and its orthologs in the alpha and beta coronaviruses. The endoribonuclease activity of the SARS-CoV Nsp15 (sNsp15) was stimulated by retinoblastoma protein (pRb) in vitro, and the two proteins can be coimmunoprecipitated from cellular extracts. Mutations in the pRb-binding motif rendered sNsp15 to be differentially modified by ubiquitin in cells, and cytotoxicity was observed upon its expression. Expression of the sNsp15 in cells resulted in an increased abundance of pRb in the cytoplasm, decreased overall levels of pRb, an increased proportion of cells in the S phase of the cell cycle, and an enhanced expression from a promoter normally repressed by pRb. The endoribonuclease activity of the mouse hepatitis virus (MHV) A59 Nsp15 was also increased by pRb in vitro, and an MHV with mutations in the LXCXE/D-motif, named vLC, exhibited a smaller plaque diameter and reduced the virus titer by ∼1 log. Overexpression of pRb delayed the viral protein production by wild-type MHV but not by vLC. This study reveals that pRb and its interaction with Nsp15 can affect coronavirus infection and adds coronaviruses to a small but growing family of RNA viruses that encode a protein to interact with pRb.
Used Model NIH 3T3 cells and Huh-7 cells
DOI 10.1128/JVI.07012-11