Virus Details


VHFID9363

Host Factor Information

Gene Name NDUFB9
HF Protein Name NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
HF Function Associated with virus infection, interact with NS4A of virus
Uniprot ID Q9Y6M9
Protein Sequence View Fasta Sequence
NCBI Gene ID 4715
Host Factor (HF) Name in Paper NDUFB9
Gene synonyms LYRM3 UQOR22
Ensemble Gene ID ENSG00000147684
Ensemble Transcript ENST00000276689;
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0005739, GO:0005743, GO:0005747, GO:0006120, GO:0007605, GO:0008137, GO:0032981, GO:0070062,
MINT ID Q9Y6M9
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 601445
PANTHER ID PTHR12868;
PDB ID(s) 5XTC, 5XTD, 5XTH, 5XTI, ,
pfam ID PF05347, ,
Drug Bank ID DB00157, ,
ChEMBL ID CHEMBL2363065;
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Dengue virus 2
Virus Short Name DENV 2
Order Unassigned
Virus Family Flaviviridae
Virus Subfamily N.A.
Genus Flavivirus
Species Dengue virus
Host Human, mammals, mosquitoes and ticks
Cell Tropism Phagocytes, hepatocytes
Associated Disease Dengue fever
Mode of Transmission Arthropod bite, mainly mosquitoes
VIPR DB link http://www.viprbrc.org/brc/home.spg?decorator=flavi
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/flaviviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Flaviviridae

Publication Information

Paper Title Comparative Flavivirus Host Protein Interaction Mapping Reveals Mechanisms of Dengue
and Zika Virus Pathogenesis
Author's Name Priya S. Shah, Nichole Link, Gwendolyn M. Jang, Phillip P. Sharp, Tongtong Zhu, 
Danielle L. Swaney, Jeffrey R. Johnson, John Von Dollen, Holly R. Ramage, Laura Satkamp, 
Billy Newton, Ruth Huttenhain, Marine J. Petit, Tierney Baum, Amanda Everitt, Orly Laufman, 
Michel Tassetto, Michael Shales, Erica Stevenson, Gabriel N. Iglesias, Leila Shokat, Shashank Tripathi, Vinod Balasubramaniam, Laurence G. Webb, Sebastian Aguirre,8 A. Jeremy Willsey, Adolfo Garcia-Sastre, Katherine S. Pollard, Sara Cherry, Andrea V. Gamarnik, Ivan Marazzi, Jack Taunton, 
Ana Fernandez-Sesma, Hugo J. Bellen, Raul Andino, and Nevan J. Krogan
Journal Name Cell
Pubmed ID 30550790
Abstract Mosquito-borne flaviviruses, including dengue virus (DENV) and Zika virus (ZIKV), are a growing public health concern. Systems-level analysis of how flaviviruses hijack cellular processes through virus-host protein-protein interactions (PPIs) provides information about their replication and pathogenic mechanisms. We used affinity purification-mass spectrometry (AP-MS) to compare flavivirus-hostinteractions for two viruses (DENV and ZIKV) in two hosts (human and mosquito). Conserved virus-host PPIs revealed that the flavivirusNS5 protein suppresses interferon stimulated genes by inhibiting recruitment of the transcription complex PAF1C and that chemical modulation of SEC61 inhibits DENV and ZIKV replication in human and mosquito cells. Finally, we identified a ZIKVspecific interaction between NS4A and ANKLE2, a gene linked to hereditary microcephaly, and showed that ZIKV NS4A causes microcephaly in Drosophila in an ANKLE2-dependent manner. Thus, comparative flavivirus-host PPI mapping provides biological insights and, when coupled with in vivo models, can be used to unravel pathogenic mechanisms.
Used Model Hek293T, Huh7, HeLa S3, U2OS, A549, Vero, BHK and Aag2
DOI 10.1016/j.cell.2018.11.028